Prototype KG‑aware adaptation of the BioPortal interface. Graph pages generated from live KG‑Registry metadata; tool links go to the live BioPortal.
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DOID

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Human Disease Ontology

KGXBioPortal ontologyv2026-09-30CC0 1.0
Visibility: Public

A KGX transformation of the BioPortal ontology Human Disease Ontology (DOID), produced by KG‑Bioportal. Nodes are ontology classes; edges are the relations between them. The base graph is the ontology on its own, imports stripped; the full graph, where built, has the import closure merged in.

Base graph at a glance

16,812
Nodes
39,477
Edges
2026-09-30
Version
2026-10-01
Transformed

Products & downloads

Base
KGX base graph (imports stripped)
DOID.tar.gz
17K nodes · 39K edges
Full
KGX full graph (imports merged in)
DOID_full.tar.gz
20K nodes · 46K edges

The base graph contains DOID_nodes.tsv and DOID_edges.tsv. The full graph contains DOID_full_nodes.tsv and DOID_full_edges.tsv: this ontology plus the 1 it imports (and their imports in turn), merged by ROBOT. Use it when the imported terms matter; the base graph merges more cleanly with other graphs. Releases are incremental, so each link points at whichever release most recently rebuilt this ontology.

Imports 1 · 1 in KG‑Bioportal

What this ontology pulls in through owl:imports. An import that is itself a BioPortal ontology links to its page here; a module of one links to the ontology it belongs to; anything else links out, or is named by its namespace when it is not a web address. The base graph leaves all of these out; the full graph, where built, has them merged in.

Biolink categories 6 categories across 16,812 nodes

Disease12,335
NamedThing4,473
Cell1
ChemicalEntity1
Gene1
NucleicAcidEntity1

An item carrying more than one category is counted under each, so these counts can add up to more than the total.

How they were assigned 12,339 of 16,812 nodes (73.4%)

5is a seed term whose Biolink class is not in doubt
12,334inherits from a seed term above it in the hierarchy

Biolink categories 1 category across 39,477 edges

Association39,477

An item carrying more than one category is counted under each, so these counts can add up to more than the total.