Prototype KG‑aware adaptation of the BioPortal interface. Graph pages generated from live KG‑Registry metadata; tool links go to the live BioPortal.
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KG-MONARCH

active

KG Monarch

biomedicalCC0 1.0kgxkgx-jsonlrdfxmlneo4j
Visibility: Public

The Monarch Initiative is an international consortium that leads key global standards and semantic data integration technologies. To maximize utility and impact, the Monarch platform is composed of multiple open-source, open-access components.

Graph at a glance

1,582,279
Nodes
15,807,241
Edges
19
Node categories
61
Predicate types

Products & downloads

kgx
KGX Distribution of KG-Monarch
monarch-kg.tar.gz
220.2 MB
kgx-jsonl
KGX JSON-L Distribution of KG-Monarch Edges
monarch-kg.jsonl.tar.gz
465.3 MB
kgx-jsonl
KGX JSON-L Distribution of KG-Monarch Nodes
monarch-kg.jsonl.tar.gz
465.3 MB
rdfxml
RDF Distribution of KG-Monarch
monarch-kg.nt.gz
838.5 MB
neo4j
Neo4j Dump of KG-Monarch Edges
monarch-kg_edges.neo4j.csv
4.1 GB
neo4j
Neo4j Dump of KG-Monarch Nodes
monarch-kg_nodes.neo4j.csv
333.4 MB
mixed
DuckDB database of KG-Monarch
monarch-kg.duckdb
6.4 GB
kgx-jsonl
KGX JSON-L Distribution of KG-Monarch
monarch-kg.jsonl.tar.gz
301.0 MB
neo4j
Neo4j Dump of KG-Monarch
monarch-kg.neo4j.dump
1.3 GB
neo4j
EpiGraphDB Graph Database

Node categories 19

AnatomicalEntityBiologicalProcessCaseCellCellularComponentChemicalEntityClinicalMeasurementDiseaseGeneGenotypeLifeStageMolecularActivityMolecularEntityNamedThingOrganismTaxonPathwayPhenotypicFeatureProteinSequenceVariant

Edge / predicate types 61

active_inactively_involved_inacts_upstream_ofacts_upstream_of_negative_effectacts_upstream_of_or_withinacts_upstream_of_or_within_negative_effectacts_upstream_of_or_within_positive_effectacts_upstream_of_positive_effectaffectsapplied_to_treatassociated_with_increased_likelihood_ofcapable_ofcaused_bycausescoexists_withcolocalizes_withcontributes_tocorrelated_withderives_fromdevelops_fromdirectly_physically_interacts_withdisease_has_locationdisruptsenables+37 more