Prototype KG‑aware adaptation of the BioPortal interface. Graph pages generated from live KG‑Registry metadata; tool links go to the live BioPortal.
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OBI

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Ontology for Biomedical Investigations

KGXBioPortal ontologyv2026-07-27CC BY 4.0
Visibility: Public

A KGX transformation of the BioPortal ontology Ontology for Biomedical Investigations (OBI), produced by KG‑Bioportal. Nodes are ontology classes; edges are the relations between them.

Graph at a glance

7,600
Nodes
16,171
Edges
2026-07-27
Version
2026-09-14
Transformed

Products & downloads

KGX
KGX nodes & edges
OBI.tar.gz
8K nodes · 16K edges
Base graph is the full graph

This ontology declares no imports, so its base graph already is its full graph; nothing separate was built.

The graph contains OBI_nodes.tsv and OBI_edges.tsv. Releases are incremental, so each link points at whichever release most recently rebuilt this ontology.

Biolink categories 19 categories across 7,600 nodes

NamedThing2,642
Activity2,410
PhysicalEntity900
InformationContentEntity699
BiologicalProcessOrActivity299
AnatomicalEntity216
MaterialSample157
Attribute96
Cell53
MacromolecularComplex50
Protein39
CellLine15
CellularComponent9
Publication9
PhenotypicFeature2
LifeStage1
OrganismTaxon1
Polypeptide1
Procedure1

An item carrying more than one category is counted under each, so these counts can add up to more than the total.

How they were assigned 4,958 of 7,600 nodes (65.2%)

19is a seed term whose Biolink class is not in doubt
4,939inherits from a seed term above it in the hierarchy

Biolink categories 1 category across 16,171 edges

Association16,171

An item carrying more than one category is counted under each, so these counts can add up to more than the total.