Prototype KG‑aware adaptation of the BioPortal interface. Graph pages generated from live KG‑Registry metadata; tool links go to the live BioPortal.
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GENEPIO

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Genomic Epidemiology Application Ontology

KGXBioPortal ontologyv2026-04-13CC BY 3.0
Visibility: Public

A KGX transformation of the BioPortal ontology Genomic Epidemiology Application Ontology (GENEPIO), produced by KG‑Bioportal. Nodes are ontology classes; edges are the relations between them.

Graph at a glance

10,962
Nodes
23,079
Edges
2026-04-13
Version
2026-09-14
Transformed

Products & downloads

KGX
KGX nodes & edges
GENEPIO.tar.gz
11K nodes · 23K edges
Base graph is the full graph

This ontology declares no imports, so its base graph already is its full graph; nothing separate was built.

The graph contains GENEPIO_nodes.tsv and GENEPIO_edges.tsv. Releases are incremental, so each link points at whichever release most recently rebuilt this ontology.

Biolink categories 25 categories across 10,962 nodes

NamedThing3,369
PhysicalEntity2,188
InformationContentEntity2,132
AnatomicalEntity650
MolecularEntity635
Disease557
Activity454
PhenotypicFeature399
OrganismTaxon118
Food115
Attribute103
Procedure58
EnvironmentalFeature47
BiologicalProcessOrActivity41
CellLine28
ChemicalEntity18
Cell13
MaterialSample12
NucleicAcidEntity10
LifeStage9
BiologicalProcess4
CellularComponent2
Protein2
MacromolecularComplex1
Polypeptide1

An item carrying more than one category is counted under each, so these counts can add up to more than the total.

How they were assigned 7,593 of 10,962 nodes (69.3%)

33is a seed term whose Biolink class is not in doubt
7,560inherits from a seed term above it in the hierarchy

Biolink categories 1 category across 23,079 edges

Association23,079

An item carrying more than one category is counted under each, so these counts can add up to more than the total.