Prototype KG‑aware adaptation of the BioPortal interface. Graph pages generated from live KG‑Registry metadata; tool links go to the live BioPortal.
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BIOMODELS

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BioModels Ontology

KGXBioPortal ontologyv21
Visibility: Public

A KGX transformation of the BioPortal ontology BioModels Ontology (BIOMODELS), produced by KG‑Bioportal. Nodes are ontology classes; edges are the relations between them.

Graph at a glance

257,551
Nodes
452,197
Edges
21
Version
2026-09-14
Transformed

Products & downloads

KGX
KGX nodes & edges
BIOMODELS.tar.gz
258K nodes · 452K edges
Base graph is the full graph

This ontology declares no imports, so its base graph already is its full graph; nothing separate was built.

The graph contains BIOMODELS_nodes.tsv and BIOMODELS_edges.tsv. Releases are incremental, so each link points at whichever release most recently rebuilt this ontology.

Biolink categories 11 categories across 257,551 nodes

NamedThing94,346
AnatomicalEntity78,542
BiologicalProcessOrActivity29,815
MolecularEntity27,136
Activity11,116
PhysicalEntity9,124
ChemicalEntity1,827
CellularComponent1,542
Cell1,467
MacromolecularComplex1,447
Attribute1,336

An item carrying more than one category is counted under each, so these counts can add up to more than the total.

How they were assigned 163,205 of 257,551 nodes (63.4%)

12is a seed term whose Biolink class is not in doubt
84,651inherits from a seed term above it in the hierarchy
78,542inherits from a root class placed by review

78,542 of these nodes inherit a category from 1 root class reviewed by Claude (model version not recorded), in a Claude Code session with the maintainer; shipped in on 2026-08-26. Not yet confirmed by a maintainer. These root classes were placed by reading them and their subclasses in the published graph, with the assistance of an AI agent. The reading, the evidence, and the refusals are recorded in reviewed_roots.yaml. See how categories are assigned.

Biolink categories 1 category across 452,197 edges

Association452,197

An item carrying more than one category is counted under each, so these counts can add up to more than the total.